Structure of PDB 5ggn Chain A

Receptor sequence
>5ggnA (length=153) Species: 9606 (Homo sapiens) [Search protein sequence]
RVLDVEVYSSRSKVYVAVDGTTVLEDEAREQGRGIHVIVLNQATGHVMAK
RVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKDTAKALLRSL
GSQAGPALGWRDTWAFVGRKGGPVFGEKHSKSPALSSWGDPVLLKTDVPL
SSA
3D structure
PDB5ggn Carbohydrate-binding domain of the POMGnT1 stem region modulates O-mannosylation sites of alpha-dystroglycan
ChainA
Resolution1.211 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.4.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 LEC A R129 Y152 D179 R207 R33 Y56 D83 R111 MOAD: Kd=0.22mM
PDBbind-CN: -logKd/Ki=3.66,Kd=0.22mM
External links
PDB RCSB:5ggn, PDBe:5ggn, PDBj:5ggn
PDBsum5ggn
PubMed27493216
UniProtQ8WZA1|PMGT1_HUMAN Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 (Gene Name=POMGNT1)

[Back to BioLiP]