Structure of PDB 5eqd Chain A

Receptor sequence
>5eqdA (length=392) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence]
TGNFDLFVVGSGFFGLTIAERAATQLGKRVLVIERRPHIGGNAYSEPEPE
TGIEVHKYGAHLFHTSNKRVWDYVRQFTDFTGYQHRVFAMHNGQAYQFPM
GLGLVSQFFGRYFSPDEARALIAEQASEIDTKDAKNFEEKAISLVGRPLY
EAFIKHYTAKQWQTDPKDLPASNITRLPVRYTFDNRYFNDTYEGLPVEGY
TKWLENMAADERIEVRLDTDWFDVRDDLRAANPDAPVVYTGPLDRYFDYA
EGRLGWRTLDFELEVLETGDFQGTPVMNYNDLDVPYTRIHEFRHFHPERT
YPTDKTVIMREYSRFADNDDEPYYPINTEADRAVLAAYRARAKAETASAK
VLFGGRLGTYQYLDMHMAIASALSMFDNVLAPHLSEGASLVT
3D structure
PDB5eqd Structural dynamics of UDP-galactopyranose mutase from Mycobacterium smegmatis
ChainA
Resolution1.83 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) R189 R193 R270 R301 E324 Y375 D377
Catalytic site (residue number reindexed from 1) R176 R180 R257 R288 E311 Y362 D364
Enzyme Commision number 5.4.99.9: UDP-galactopyranose mutase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FAD A V22 G23 G25 F26 F27 I46 E47 R48 R49 G54 N55 A73 H74 L75 W234 F235 G254 Y336 G368 R369 Y375 L376 D377 M378 A381 V9 G10 G12 F13 F14 I33 E34 R35 R36 G41 N42 A60 H61 L62 W221 F222 G241 Y323 G355 R356 Y362 L363 D364 M365 A368
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0008767 UDP-galactopyranose mutase activity
GO:0016853 isomerase activity
GO:0046872 metal ion binding
GO:0050660 flavin adenine dinucleotide binding
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:5eqd, PDBe:5eqd, PDBj:5eqd
PDBsum5eqd
PubMed
UniProtA0R629

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