Structure of PDB 5edl Chain A

Receptor sequence
>5edlA (length=197) Species: 1423 (Bacillus subtilis) [Search protein sequence]
SWKVKEIVIMSVISIVFAVVYLLFTHFGNVLAGMFGPIAYEPIYGIWFIV
SVIAAYMIRKPGAALVSEIIAALVECLLGNPSGPMVIVIGIVQGLGAEAV
FLATRWKAYSLPVLMLAGMGSSVASFIYDLFVSGYAAYSPGYLLIMLVIR
LISGALLAGLLGKAVSDSLAYTGVLNGMALGKELKKKRKRASEHASL
3D structure
PDB5edl Crystal Structure of a Group I Energy Coupling Factor Vitamin Transporter S Component in Complex with Its Cognate Substrate.
ChainA
Resolution1.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 VIB A Y23 Y42 Y46 W49 E77 V88 Q95 D131 S135 Y21 Y40 Y44 W47 E75 V86 Q93 D129 S133 MOAD: Kd=4.5nM
PDBbind-CN: -logKd/Ki=8.35,Kd=4.5nM
BS02 MPG A E100 A101 W108 E98 A99 W106
BS03 MPG A A126 I129 V134 A124 I127 V132
Gene Ontology
Cellular Component
GO:0005886 plasma membrane

View graph for
Cellular Component
External links
PDB RCSB:5edl, PDBe:5edl, PDBj:5edl
PDBsum5edl
PubMed27447050
UniProtO34738|YKOE_BACSU Putative HMP/thiamine permease protein YkoE (Gene Name=ykoE)

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