Structure of PDB 5e2f Chain A

Receptor sequence
>5e2fA (length=237) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence]
HLNVSKMNVDDEFKDTDGTFILHDLQKDQTFVYNRKRANQRQTPQSTFKV
VNALIGLQVKAVRDEYDVKRWDGVKREFESWNRDHTLGSAMRESAIWYYQ
ALARDIGEERMKTWLHTLSYGNEDISGGIDQFWLQSSLTISPLEQETFLE
KLAKEELPFDKPVMKIVKRMMIQEEGDHYTLYGKTGTRLTDMGLGWFVGF
IKTEHGSYVFVTNVDDSGTKAKNITVDILKKYGLITS
3D structure
PDB5e2f Crystal Structure of Beta-lactamase class D from Bacillus subtilis
ChainA
Resolution1.3 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) S76 K79 S124 Y129 W163 T217
Catalytic site (residue number reindexed from 1) S46 K49 S94 Y99 W133 T187
Enzyme Commision number 3.5.2.6: beta-lactamase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A D41 E42 D11 E12
Gene Ontology
Molecular Function
GO:0008658 penicillin binding
GO:0008800 beta-lactamase activity
Biological Process
GO:0017001 antibiotic catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5e2f, PDBe:5e2f, PDBj:5e2f
PDBsum5e2f
PubMed
UniProtP54427|YBXI_BACSU Probable beta-lactamase YbxI (Gene Name=ybxI)

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