Structure of PDB 5dyg Chain A

Receptor sequence
>5dygA (length=446) Species: 9606 (Homo sapiens) [Search protein sequence]
AILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKR
REAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRI
HVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFK
VVETDPSPYCIVAPDTVIHCEGEPIKREDEEESWNEVGYDDIGGCRKQLA
QIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA
FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE
KTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFD
REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL
CSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSN
3D structure
PDB5dyg Role of the D1-D2 Linker of Human VCP/p97 in the Asymmetry and ATPase Activity of the D1-domain.
ChainA
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.6: vesicle-fusing ATPase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP A G207 G248 T249 G250 K251 T252 L253 I380 H384 G408 A409 G193 G234 T235 G236 K237 T238 L239 I366 H370 G394 A395
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity

View graph for
Molecular Function
External links
PDB RCSB:5dyg, PDBe:5dyg, PDBj:5dyg
PDBsum5dyg
PubMed26818443
UniProtP55072|TERA_HUMAN Transitional endoplasmic reticulum ATPase (Gene Name=VCP)

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