Structure of PDB 5do8 Chain A

Receptor sequence
>5do8A (length=552) Species: 169963 (Listeria monocytogenes EGD-e) [Search protein sequence]
EKDWWKKSVVYQIYPKSFNDSNGDGVGDIQGIIEKLDYLKELGVDVIWLS
PVYDSPQDDNGYDIRDYQKIYEEYGDMATFDQLLQGLHDRDMKLVMDLVV
NHTSDEHKWFEESRKSKDNPYRDYYFWREENEINNWGSIFSGPAWELDEK
TGEYYLHLFSKKQPDLNWENPKLRQDVYNMMKFWLDKGIDGFRMDVINFI
SKNTDFPDGPVPDGQIYGDAGNDFCNGPRIHEFLQEMNQEVTSKYDVMTV
GEMPGASTTDAQIYTNPANNEVDMIFTFEHMNLDSDSDNKWDLKPIYLPD
LKENMSEWQVALQENGWNSLYWNNHDQPRIVSRFGNDNRFRVRSAKMLAT
CLHMMKGTPYIYQGEEIGMTNVHFETLDDYRDIETLNMYKERKEQGHSHE
SIMQSIYTKGRDNARTPYQWDNSENAGFTTGTPWLKVNPRYTEINNEEAL
KNPDSIFYYYQNLIKLRKTTEIITTGNYRLLLPKDEAIFAYERYTENEKL
VVLCNFTEEEQVISDETILNEIQKGSVLVNNVPNIIEGTLRPYEAIVYQI
KG
3D structure
PDB5do8 Structure to function of an alpha-glucan metabolic pathway that promotes Listeria monocytogenes pathogenesis.
ChainA
Resolution1.8 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) D99 R195 D197 E254 H327 D328
Catalytic site (residue number reindexed from 1) D97 R193 D195 E252 H325 D326
Enzyme Commision number 3.2.1.10: oligo-1,6-glucosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 BGC A D61 Y64 H104 F161 R195 D197 E254 H327 D328 R413 D59 Y62 H102 F159 R193 D195 E252 H325 D326 R411
Gene Ontology
Molecular Function
GO:0004556 alpha-amylase activity
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0009313 oligosaccharide catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5do8, PDBe:5do8, PDBj:5do8
PDBsum5do8
PubMed27819654
UniProtQ8YAE6

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