Structure of PDB 5dlf Chain A

Receptor sequence

>5dlfA (length=430) Species: 9606 (Homo sapiens)

GPHMATGQDRVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGI
IAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASV
EVMEIMSRFAVIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYI
EGLPQGPTVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRA
AIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPI
RKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMC
RGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERL
TKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTV
IKNCNTSGIQTEWSPPLTMLFLCATKFSAS

3D structure

• PDB: 5dlf Lesion Orientation ofO4-Alkylthymidine Influences Replication by Human DNA Polymeraseeta.
• Chain: A
• Resolution: 1.97 Å

Enzymatic activity

• Enzyme Commision number: 2.7.7.7: DNA-directed DNA polymerase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	A	Q38 Y39 W42 K43 G46 S62 M63 W64 K86 L89 R93 K311 P316 K317 T318 I319 G320 S322 K323 N324 P326 R351	Q41 Y42 W45 K46 G49 S65 M66 W67 K89 L92 R96 K309 P314 K315 T316 I317 G318 S320 K321 N322 P324 R349
BS02	dna	A	S113 E116 K224 S257 G259 G260 K261 L262 R377 L381 R382	S116 E119 K222 S255 G257 G258 K259 L260 R375 L379 R380
BS03	DTP	A	M14 C16 F17 F18 I48 Y52 R55 R61 D115	M17 C19 F20 F21 I51 Y55 R58 R64 D118
BS04	CA	A	D13 M14 D115	D16 M17 D118

Gene Ontology

Molecular Function

• GO:0003684 damaged DNA binding

Biological Process

• GO:0006281 DNA repair

External links

• PDB: RCSB:5dlf, PDBe:5dlf, PDBj:5dlf
• PDBsum: 5dlf
• PubMed: 27574558
• UniProt: Q9Y253|POLH_HUMAN DNA polymerase eta (Gene Name=POLH)