Structure of PDB 5d9p Chain A

Receptor sequence
>5d9pA (length=347) Species: 77095 (Segatella bryantii) [Search protein sequence]
ATYMEESAQSAVDNFGLGFNLGNTLDANGCGTGKPVATYETFWGQPETTQ
DMMTFLMQNGFNAVRIPVTWYEHMDAEGNVDEAWMMRVKAIVEYAMNAGL
YAIVNVHHDTAAGSGAWIKADTDVYAATKEKFKKLWTQIANALADYDQHL
LFEGYNEMLDGNNSWDEPQKASGYEALNNYAQDFVDAVRATGGNNATRNL
IVNTYAAAKGENVLNNFMLPTDAVNNHLIVQVHSYDPWNFFNTKTTWDSE
CHNTLTEIFSALSKKFTTIPYIIGEYGTHGESDISVSKSSPAEKIKLAAD
QAADMVKLAKDHHSATFYWMSIFDGSDRIQPQWSLPTVVEAMQEAYN
3D structure
PDB5d9p Structure-Function Analysis of a Mixed-linkage beta-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B14.
ChainA
Resolution1.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NBG A H112 H113 N161 E162 H238 Y240 E280 D288 W324 H107 H108 N156 E157 H233 Y235 E275 D283 W319 PDBbind-CN: -logKd/Ki=3.20,Kd=0.63mM
BS02 BGC A N28 W48 D288 W324 N23 W43 D283 W319
BS03 XYS A H113 A117 H108 A112
BS04 BGC A W170 W243 W165 W238
BS05 XYS A A212 A213 K214 H238 Y240 D241 A207 A208 K209 H233 Y235 D236
BS06 XYS A D241 P242 D236 P237
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Biological Process
GO:0000272 polysaccharide catabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:5d9p, PDBe:5d9p, PDBj:5d9p
PDBsum5d9p
PubMed26507654
UniProtO06842

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