Structure of PDB 5d62 Chain A

Receptor sequence

>5d62A (length=292) Species: 181124 (Marasmius oreades) [Search protein sequence]

SLRRGIYHIENAGVPSAIDLKDGSSSDGTPIVGWQFTPDTINWHQLWLAE
PIPNVADTFTLCNLFSGTYMDLYNGSSEAGTAVNGWQGTAFTTNPHQLWT
IKKSSDGTSYKIQNYGSKTFVDLVNGDSSDGAKIAGWTGTWDEGNPHQKW
YFNRMSVSSAEAQAAIARNPHIHGTYRGYILDGEYLVLPNATFTQIWKDS
GLPGSKWREQIYDCDDFAIAMKAAVGKWGADSWKANGFAIFCGVMLGVNK
AGDAAHAYNFTLTKDHADIVFFEPQNGGYLNDIGYDSYMAFY

3D structure

PDB

5d62 An Unusual Member of the Papain Superfamily: Mapping the Catalytic Cleft of the Marasmius oreades agglutinin (MOA) with a Caspase Inhibitor.

Chain

Resolution

1.7 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	peptide	A	W208 C215 H257 E274 Q276	W207 C214 H256 E273 Q275
BS02	GAL	A	D20 K22 D23 W35 H45 C215	D19 K21 D22 W34 H44 C214
BS03	GLA	A	W35 Q36 T38 N43	W34 Q35 T37 N42
BS04	GLA	A	D72 N75 W87 N95 H97	D71 N74 W86 N94 H96
BS05	GLA	A	W87 Q88 N95	W86 Q87 N94
BS06	GLA	A	D123 V125 N126 W138 N146 H148	D122 V124 N125 W137 N145 H147
BS07	GLA	A	W138 T139 E144 N146	W137 T138 E143 N145
BS08	CA	A	Q211 D214 D216 D217	Q210 D213 D215 D216
BS09	CA	A	D214 D216	D213 D215

Gene Ontology

	Molecular Function
GO:0046872	metal ion binding

View graph for
Molecular Function

External links

PDB	RCSB:5d62, PDBe:5d62, PDBj:5d62
PDBsum	5d62
PubMed	26901797
UniProt	Q8X123

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