Structure of PDB 5d2r Chain A

Receptor sequence
>5d2rA (length=420) Species: 563041 (Helicobacter pylori G27) [Search protein sequence]
SMEMIEKAPTDLEDRDKAPHLLLLAGIQGDEPGGFNATNLFLMHYSVLKG
LVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKKDPEYPTIQEIKSLIAK
PNIDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEVKGAKFPNLL
AFANNTIESINAHLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSA
FANEASKELPLASRVFYHLQAIEGLLNQLNIPFKRDFELNPSSVHALIND
KSLWAKISSLPKIPLFNLRPRLNHFPLPHNTKIPQIPIESNAYIVGLVKN
KQEVFLKYGNKLMTRLSPFYIEFDPSLEEVKMQIDNKDQMVKIGSVVEVK
ESFYIHAMDNIRANVIGFSVSNENKPNEAGYTIRFKDFQKRFSLDKQERI
YRIEFYKNNAFSGMILVKFV
3D structure
PDB5d2r A Bacterial Cell Shape-Determining Inhibitor.
ChainA
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A Q46 E49 H128 Q28 E31 H110
BS02 ZN A H62 D254 H44 D236
BS03 ZN A D157 E158 D139 E140
BS04 56W A Q46 E49 R86 N93 R94 H126 H128 G130 W148 M203 T208 A220 E222 K225 Q28 E31 R68 N75 R76 H108 H110 G112 W130 M185 T190 A202 E204 K207 MOAD: Ki=1.5uM
PDBbind-CN: -logKd/Ki=5.82,Ki=1.5uM
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5d2r, PDBe:5d2r, PDBj:5d2r
PDBsum5d2r
PubMed26735022
UniProtB5ZAD9

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