Structure of PDB 5d1o Chain A

Receptor sequence
>5d1oA (length=375) Species: 187420 (Methanothermobacter thermautotrophicus str. Delta H) [Search protein sequence]
DIPFDLIQERTGVPSSRLKVAFARGSLRLLESAGMQALLFKKPLGDLEAG
TVIYLGDETEVIRGFPKIRRTLLLSPTIQEHFRDRVAVEEKMNGYNVRIA
CLSSGETVALTRGGHVCPFTTRKAQELLDLSEFFREHPDLVICGEMIGRD
NPYVSQDYPEVGPLGFRVFDLREKNTNRPLPVEERRALLDSYGLPNVRLF
GVYPIEEAASEVADIIRALGMAGREGVVMKDPSMEVPPLKYTSSQAHARE
LAYAFSYPFDFGRPFFFSRVIREGFQAYELDESDDETRERARRLGEAIIY
PMLERIKSISAGEAAYEDTVIDVEDREAAEEFIRHLVRLGVSATLADYRD
GRATIRRFYQSTTDRINNYLKGGLY
3D structure
PDB5d1o Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
ChainA
Resolution2.648 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ATP A F71 K73 I74 E95 E96 K97 M98 N102 R118 E151 F175 V234 K246 F65 K67 I68 E89 E90 K91 M92 N96 R112 E145 F169 V228 K240
BS02 SO4 A R76 K246 R70 K240
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5d1o, PDBe:5d1o, PDBj:5d1o
PDBsum5d1o
PubMed26896806
UniProtO27289

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