Structure of PDB 5cvk Chain A

Receptor sequence
>5cvkA (length=169) Species: 291331 (Xanthomonas oryzae pv. oryzae KACC 10331) [Search protein sequence]
MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAP
QIAVDLQLMVFGFEARYPEAPAVPLTALANAQIEPLSDEMENGWEGCLSI
PGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRLYP
SRIENFDTFGFDDVLSYDL
3D structure
PDB5cvk Structure of Xoo1075, a peptide deformyase from Xanthomonas oryzae pv.oryze, in complex with fragment 493
ChainA
Resolution2.1 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C99 L100 H141 E142 H145
Catalytic site (residue number reindexed from 1) G46 Q51 C97 L98 H139 E140 H143
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 56E A V45 Y69 G98 C99 H141 E142 V45 Y67 G96 C97 H139 E140
Gene Ontology
Molecular Function
GO:0042586 peptide deformylase activity

View graph for
Molecular Function
External links
PDB RCSB:5cvk, PDBe:5cvk, PDBj:5cvk
PDBsum5cvk
PubMed
UniProtQ5H3Z2

[Back to BioLiP]