Structure of PDB 5cpz Chain A

Receptor sequence
>5cpzA (length=280) Species: 47935 (Mouse polyomavirus (strain p16 small-plaque)) [Search protein sequence]
GMEVLDLVTGPDSVTEIEAFLNPRMGQPPTPESLTEGGQYYGWSRGINLA
TSDTEDSPGNNTLPTWSMAKLQLPMLNCDTLQMWEAVSVKTEVVGSGSLL
DVHGFNKPTDTVNTKGISTPVEGSQYHVFAVGGEPLDLQGLVTDARTKYK
EEGVVTIKTITKKDMVNKDQVLNPISKAKLDKDGMYPVEIWHPDPAKNEN
TRYFGNYTGGTTTPPVLQFTNTLTTVLLDENGVGPLCKGEGLYLSCVDIM
GWRVTRNYDVHHWRGLPRYFKITLRKRWVK
3D structure
PDB5cpz Structural and Functional Analysis of Murine Polyomavirus Capsid Proteins Establish the Determinants of Ligand Recognition and Pathogenicity.
ChainA
Resolution1.71 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL A G78 N93 G46 N61
BS02 SIA A Y72 R77 H298 Y40 R45 H262
BS03 SIA A T67 E68 Y72 R77 T35 E36 Y40 R45
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

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Molecular Function
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Cellular Component
External links
PDB RCSB:5cpz, PDBe:5cpz, PDBj:5cpz
PDBsum5cpz
PubMed26474293
UniProtP49302|VP1_POVMP Capsid protein VP1

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