Structure of PDB 5cpd Chain A

Receptor sequence
>5cpdA (length=168) Species: 291331 (Xanthomonas oryzae pv. oryzae KACC 10331) [Search protein sequence]
MIRDIIRMGDKRLLRVAPQVTNLGSAELHALVSDMFETMGAAHGVGLAAP
QIAVDLQLMVFGFEASERYPEAPAVPLTALANAQIEPLSDEMENGWEGCL
SIPGLRAVIPRYRYIRYRGFAPDGSPIEREAEGFHARVVQHEYDHLVGRL
YPSRIENFDTFGFDDVLS
3D structure
PDB5cpd Substrates complexed structure of XOO1075, a peptide defromylase from xanthomonas oryzae pv. oryzae
ChainA
Resolution2.2 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C99 L100 H141 E142 H145
Catalytic site (residue number reindexed from 1) G46 Q51 C99 L100 H141 E142 H145
Enzyme Commision number 3.5.1.88: peptide deformylase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MET A G44 V45 G46 G98 F134 H141 E142 G44 V45 G46 G98 F134 H141 E142
BS02 ALA A R68 Y69 G98 L100 R68 Y69 G98 L100
Gene Ontology
Molecular Function
GO:0042586 peptide deformylase activity

View graph for
Molecular Function
External links
PDB RCSB:5cpd, PDBe:5cpd, PDBj:5cpd
PDBsum5cpd
PubMed
UniProtQ5H3Z2

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