Structure of PDB 5cld Chain A

Receptor sequence
>5cldA (length=231) Species: 1396 (Bacillus cereus) [Search protein sequence]
VPMHPFVKALQEHFTAHQNPEKAEPMARYMKNHFLFLGIQTPERRQLLKD
IIQIHTLPDQKDFQIIIRELWDLPEREFQAAALDIMQKYKKHINETHIPF
LEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIASDNIWLQR
AAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPD
VVWEYVQNNELAPLSKREAIKHIKQNYGINN
3D structure
PDB5cld The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.
ChainA
Resolution1.541 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.2.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A Y27 K29 W109 R148 F179 F180 K183 W187 R190 K194 H220 Y29 K31 W111 R150 F181 F182 K185 W189 R192 K196 H222
BS02 dna A Q38 T39 R43 R215 Q40 T41 R45 R217
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5cld, PDBe:5cld, PDBj:5cld
PDBsum5cld
PubMed26524531
UniProtQ816E8

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