Structure of PDB 5agr Chain A

Receptor sequence
>5agrA (length=190) Species: 83332 (Mycobacterium tuberculosis H37Rv) [Search protein sequence]
GAVALFSARAVDIEVFTTRPDTLFGATYLVLAPEHDLVDELVAASWPAGV
NPLWTYGGGTPGEAIAAYRRAIAAKSDLERQKTGVFLGSYAINPANGEPV
PIFIADYVLAGYGTGAIMAVPGHDQRDWDFARAFGLPIVEVIAGGNISES
AYTGDGILVNSDYLNGMSVPAAKRAIVDRLESAGRGRARI
3D structure
PDB5agr Discovery of Novel Oral Protein Synthesis Inhibitors of Mycobacterium Tuberculosis that Target Leucyl-tRNA Synthetase.
ChainA
Resolution1.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.1.1.4: leucine--tRNA ligase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 A52 A F335 T336 T337 R338 V431 L432 Y435 I440 M441 D447 R449 D450 F16 T17 T18 R19 V108 L109 Y112 I117 M118 D124 R126 D127 PDBbind-CN: -logKd/Ki=5.43,Kd=3.7uM
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0002161 aminoacyl-tRNA editing activity
GO:0004823 leucine-tRNA ligase activity
GO:0005524 ATP binding
Biological Process
GO:0006418 tRNA aminoacylation for protein translation
GO:0006429 leucyl-tRNA aminoacylation

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Molecular Function
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Biological Process
External links
PDB RCSB:5agr, PDBe:5agr, PDBj:5agr
PDBsum5agr
PubMed27503647
UniProtP9WFV1|SYL_MYCTU Leucine--tRNA ligase (Gene Name=leuS)

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