Structure of PDB 5a3y Chain A

Receptor sequence

>5a3yA (length=316) Species: 1427 (Bacillus thermoproteolyticus)

ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGNGIFTYDAKYRTTL
PGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAI
RSSVHYSQGYNNAFWNGSQMVYGDGDGQTFIPLSGGIDVVAHELTHAVTD
YTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGD
SLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAYLISQGGTH
YGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTS
QEVASVKQAFDAVGVK

3D structure

• PDB: 5a3y Meshandcollect: An Automated Multi-Crystal Data-Collection Workflow for Synchrotron Macromolecular Crystallography Beamlines.
• Chain: A
• Resolution: 1.27 Å

Enzymatic activity

• Catalytic site (original residue number in PDB): H142 E143 H146 Y157 E166 D226 H231
• Catalytic site (residue number reindexed from 1): H142 E143 H146 Y157 E166 D226 H231
• Enzyme Commision number: 3.4.24.27: thermolysin.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	VAL	A	N112 E143 R203	N112 E143 R203
BS02	LYS	A	N111 N112 F130 H231	N111 N112 F130 H231
BS03	ZN	A	H142 H146 E166	H142 H146 E166
BS04	CA	A	D138 E177 D185 E187 E190	D138 E177 D185 E187 E190
BS05	CA	A	E177 N183 D185 E190	E177 N183 D185 E190
BS06	CA	A	D57 D59 Q61	D57 D59 Q61
BS07	CA	A	Y193 T194 I197 D200	Y193 T194 I197 D200
BS08	TMO	A	Y93 Y151	Y93 Y151

Gene Ontology

Molecular Function

• GO:0004222 metalloendopeptidase activity

Biological Process

• GO:0006508 proteolysis

External links

• PDB: RCSB:5a3y, PDBe:5a3y, PDBj:5a3y
• PDBsum: 5a3y
• PubMed: 26527148
• UniProt: P00800|THER_BACTH Thermolysin (Gene Name=npr)