Structure of PDB 4ytb Chain A

Receptor sequence
>4ytbA (length=422) Species: 242619 (Porphyromonas gingivalis W83) [Search protein sequence]
AFQETNPPAGPVRAIAEYERSAAVLVRYPFGIPMELIKELAKNDKVITIV
ASESQKNTVITQYTQSGVNLSNCDFIIAKTDSYWTRDYTGWFAMYDTNKV
GLVDFIYNRPRPNDDEFPKYEAQYLGIEMFGMKLKQTGGNYMTDGYGSAV
QSHIAYTENSSLSQAQVNQKMKDYLGITHHDVVQDPNGEYINHVDCWGKY
LAPNKILIRKVPDNHPQHQALEDMAAYFAAQTCAWGTKYEVYRALATNEQ
PYTNSLILNNRVFVPVNGPASVDNDALNVYKTAMPGYEIIGVKGASGTPW
LGTDALHCRTHEVADKGYLYIKHYPILGEQAGPDYKIEADVVSCANATIS
PVQCYYRINGSGSFKAADMTMESTGHYTYSFTGLNKNDKVEYYISAADNS
GRKETYPFIGEPDPFKFTCMNE
3D structure
PDB4ytb Structure and mechanism of a bacterial host-protein citrullinating virulence factor, Porphyromonas gingivalis peptidylarginine deiminase.
ChainA
Resolution1.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.5.3.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GLN A W127 D130 R152 Y233 I234 D347 C351 W84 D87 R109 Y190 I191 D304 C308
Gene Ontology
Molecular Function
GO:0004668 protein-arginine deiminase activity
Biological Process
GO:0009446 putrescine biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:4ytb, PDBe:4ytb, PDBj:4ytb
PDBsum4ytb
PubMed26132828
UniProtQ9RQJ2|PAD_PORGI Peptidylarginine deiminase (Gene Name=PG_1424)

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