Structure of PDB 4ymd Chain A

Receptor sequence
>4ymdA (length=154) Species: 9606 (Homo sapiens) [Search protein sequence]
SQLRKAIGEMDNQVSQLTSELKFIKNAVAGVRETESKIYLLVKEEKRYAD
AQLSCQGRGGTLSMPKDEAANGLMAAYLAQAGLARVFIGINDLEKEGAFV
YSDHSPMRTFNKWRSGEPNNAYDEEDCVEMVASGGWNDVACHTTMYFMCE
FDKE
3D structure
PDB4ymd Molecular basis of sugar recognition by collectin-K1 and the effects of mutations associated with 3MC syndrome.
ChainA
Resolution2.87 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MAN A E232 N234 E240 N252 E117 N119 E125 N137
BS02 MAN A R200 N252 R85 N137
BS03 CA A D207 E211 N235 E240 D241 D92 E96 N120 E125 D126
BS04 CA A E232 N234 E240 N252 D253 E117 N119 E125 N137 D138
BS05 CA A D238 E239 D241 D123 E124 D126
External links
PDB RCSB:4ymd, PDBe:4ymd, PDBj:4ymd
PDBsum4ymd
PubMed25912189
UniProtQ9BWP8|COL11_HUMAN Collectin-11 (Gene Name=COLEC11)

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