Structure of PDB 4yit Chain A

Receptor sequence

>4yitA (length=272) Species: 127520 (Gremmeniella abietina) [Search protein sequence]

INPWFLTGFIDGEGCFRISVTKWRVQLFFQINLHEKDRALLESIKDYLKV
GKIHISGKNLVQYRIQTFDELTILIKHLKEYPLVSKKRADFELFNTAHKL
IKNNEHLNKEGINKLVSLKASLNLGLSSLKLAFPNVIATRLNIPDPHWLS
GFASAEGCFMVGIAKSSASSTGYQVYLTFILTQHVRDENLMKCLVDYFNW
GRLARKRNVYEYQVKFSDVEKLLSFFDKYPILGEKAKDLQDFCSVSDLMK
SKTHLTEEGVAKIRKIKEGMNR

3D structure

PDB

4yit Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity.

Chain

Resolution

3.24 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	A	R30 S62 R70 Q72 T73 F74 A168 E169 G170 C171 M173 K178 T195 Q196 H197 R220 K281 N285	R24 S56 R64 Q66 T67 F68 A155 E156 G157 C158 M160 K165 T182 Q183 H184 R207 K267 N271
BS02	dna	A	G12 E13 C15 R17 T21 K22 N38 L39 H40 L66 R70 N129 L130 E169 S183 Q187 R215 K219 R220 K229 F230 H268 L269	G12 E13 C15 R17 T21 K22 N32 L33 H34 L60 R64 N123 L124 E156 S170 Q174 R202 K206 R207 K215 F216 H254 L255
BS03	CA	A	G12 E169	G12 E156
BS04	CA	A	E13 A168	E13 A155
BS05	CA	A	D209 N212	D196 N199

Gene Ontology

	Molecular Function
GO:0004519	endonuclease activity
GO:0046872	metal ion binding

	Cellular Component
GO:0005739	mitochondrion

View graph for
Molecular Function

View graph for
Cellular Component

External links

PDB	RCSB:4yit, PDBe:4yit, PDBj:4yit
PDBsum	4yit
PubMed	27133026
UniProt	A0A158RFF2

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