Structure of PDB 4ygr Chain A

Receptor sequence
>4ygrA (length=215) Species: 523850 (Thermococcus onnurineus NA1) [Search protein sequence]
MKAVLFDIDGTILTEEPLIMLFLPQVYDKLSRKLGISKDEARERFLSEIL
GRRDSYDWHDWNFFFKLFDLDLKYEELLERYPHKLQVYPDTIPTLEWLRD
TGYKLGIVTSGPKYQRLKLKLTGLLDYFDVVITRDDVNAIKPEPKIFLYT
IERLGVEPGEAVMVGDSLSQDVYGAKSVGMTAVWINRNGDRGYNMADYEI
RTLYELRKILGGERV
3D structure
PDB4ygr Structural basis for the substrate selectivity of a HAD phosphatase from Thermococcus onnurineus NA1
ChainA
Resolution1.703 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) D7 D9 E15 K38 T109 S110 G111 K141 G165 D166 L168 Q170 D171
Catalytic site (residue number reindexed from 1) D7 D9 E15 K38 T109 S110 G111 K141 G165 D166 L168 Q170 D171
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NHE A D9 W58 W61 D9 W58 W61
BS02 NHE A L50 R53 W58 L50 R53 W58
BS03 MG A D7 D9 D166 D7 D9 D166
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0016791 phosphatase activity
GO:0046872 metal ion binding
Biological Process
GO:0016311 dephosphorylation
GO:0044283 small molecule biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:4ygr, PDBe:4ygr, PDBj:4ygr
PDBsum4ygr
PubMed25858319
UniProtB6YTD6

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