Structure of PDB 4x9m Chain A

Receptor sequence

>4x9mA (length=384) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence]

METRDVLIVGGGVIGCATAYELSQYKLKVTLVEKHHYLAQETSHANSGVI
HTGIDPNPHKLTAKYNILGKKLWLNTYFKRLGFPRQKIRTLIVAFNEMER
EQLEVLKQRGIANQINLEDIQMLSKEETLKLEPYVNPEIVAGLKIEGSWA
IDPVLASKCLALAAQQNKVQICTNTEVTNISKQVDGTYLVWTNNETTPSF
KVKKIIDAAGHYADYLAHLAKADDFEQTTRRGQYVVVTNQGELHLNSMVF
MVPTIHGKGVIVSPMLDGNFLVGPTALDGVDKEATRYITKDAPCMLTKIG
KHMVPSLNINNALISFAGSRPIDKATNDFIIRVAHNDPDFVILGGMKSPG
LTAAPAIVREAVRLLNWKLTKKPNWNGKYNLPWI

3D structure

PDB

4x9m Structure and proposed mechanism of l-alpha-glycerophosphate oxidase from Mycoplasma pneumoniae.

Chain

Resolution

2.4 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

1.1.3.21: glycerol-3-phosphate oxidase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FAD	A	G10 G12 I14 E33 K34 E41 T42 S43 A45 N46 S47 V49 H51 E176 V177 A209 G210 Y212 Y234 S319 R320 M346 K347 S348 P349 G350 L351 T352	G10 G12 I14 E33 K34 E41 T42 S43 A45 N46 S47 V49 H51 E176 V177 A209 G210 Y212 Y234 S319 R320 M346 K347 S348 P349 G350 L351 T352
BS02	G3P	A	S47 H51 K258 G259 R320 S348	S47 H51 K258 G259 R320 S348

External links

PDB	RCSB:4x9m, PDBe:4x9m, PDBj:4x9m
PDBsum	4x9m
PubMed	25688572
UniProt	P75063\|GLPO_MYCPN Glycerol 3-phosphate oxidase (Gene Name=glpD)

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