Structure of PDB 4uhm Chain A

Receptor sequence

>4uhmA (length=435) Species: 306 (Pseudomonas sp.)

DLNLKAHWMPFSANRNFHKDPRIIVAAEGSWLVDDKGRRIYDSLSGLWTC
GAGHSRKEIADAVAKQIGTLDYSPGFQYGHPLSFQLAEKIAQMTPGTLDH
VFFTGSGSECADTSIKMARAYWRIKGQAQKTKLIGRARGYHGVNVAGTSL
GGIGGNRKMFGPLMDVDHLPHTLQPGMAFTKGAAETGGVELANELLKLIE
LHDASNIAAVIVEPMSGSAGVIVPPKGYLQRLREICDANDILLIFDEVIT
AFGRMGKATGAEYFGVTPDIMNVAKQVTNGAVPMGAVIASSEIYDTFMNQ
NLPEYAVEFGHGYTYSAHPVACAAGIAALDLLQKENLIQQSAELAPHFEK
ALHGLKGTKNVIDIRNCGLAGAIQIAARDGDAIVRPFEASMKLWKEGFYV
RFGGDTLQFGPTFNAKPEDLDRLFDAVGEALNGVA

3D structure

• PDB: 4uhm A Beta-Alanine Catabolism Pathway Containing a Highly Promiscuous Omega-Transaminase in the 12-Aminododecanate-Degrading Pseudomonas Sp. Strain Aac.
• Chain: A
• Resolution: 1.33 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	MG	A	A104 D112	A91 D99
BS02	PLP	A	G120 S121 Y153 H154 G155 E226 D259 V261 I262 K288	G107 S108 Y140 H141 G142 E213 D246 V248 I249 K275

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sun Dec 1 00:48:31 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '4uhm', asym_id = 'A', title = 'A Beta-Alanine Catabolism Pathway Containing a H...dodecanate-Degrading Pseudomonas Sp. Strain Aac. '

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='4uhm', asym_id='A', title='A Beta-Alanine Catabolism Pathway Containing a H...dodecanate-Degrading Pseudomonas Sp. Strain Aac. ')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0008483,0030170', uniprot = '', pdbid = '4uhm', asym_id = 'A'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008483,0030170', uniprot='', pdbid='4uhm', asym_id='A')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>