Structure of PDB 4qvi Chain A

Receptor sequence
>4qviA (length=229) Species: 274 (Thermus thermophilus) [Search protein sequence]
MPKHGKRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGI
DPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEI
IQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNI
GEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAH
KPEGAKGTFLRSVYVTTTLGPSVRINPHS
3D structure
PDB4qvi Protein-RNA affinity of ribosomal protein L1 mutants does not correlate with the number of intermolecular interactions.
ChainA
Resolution1.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A M0 H3 G4 K5 R6 Y7 A35 K36 T40 E42 H44 K46 R134 D166 T168 H172 S211 Y213 T215 T217 L218 G219 S221 M1 H4 G5 K6 R7 Y8 A36 K37 T41 E43 H45 K47 R135 D167 T169 H173 S212 Y214 T216 T218 L219 G220 S222 PDBbind-CN: Kd=0.148uM
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
GO:0006417 regulation of translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:4qvi, PDBe:4qvi, PDBj:4qvi
PDBsum4qvi
PubMed25664749
UniProtP27150|RL1_THETH Large ribosomal subunit protein uL1 (Gene Name=rplA)

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