Structure of PDB 4q39 Chain A

Receptor sequence
>4q39A (length=259) Species: 269797 (Methanosarcina barkeri str. Fusaro) [Search protein sequence]
MALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGI
VPVTSGNGIIGNFSASLHAITQYFGFDSFVTDMPDVSGYYEAVQNGAEII
LMADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLG
KVGFPGAEHLVQKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSII
FEATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQLIAEPLGIG
TASMLYSVL
3D structure
PDB4q39 The Formation of Pyrroline and Tetrahydropyridine Rings in Amino Acids Catalyzed by Pyrrolysine Synthase (PylD).
ChainA
Resolution2.2 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 1.4.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 NAI A N121 T125 G150 K151 V152 Y170 D171 A172 A203 T204 P205 P224 I226 P246 N121 T125 G150 K151 V152 Y170 D171 A172 A203 T204 P205 P224 I226 P246
BS02 MG A Y129 E245 L247 I249 Y129 E245 L247 I249
BS03 PYL A L3 L4 V53 I59 I60 F63 A103 L3 L4 V53 I59 I60 F63 A103
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
Biological Process
GO:0008652 amino acid biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4q39, PDBe:4q39, PDBj:4q39
PDBsum4q39
PubMed24916332
UniProtQ46E80|PYLD_METBF Pyrrolysine synthase (Gene Name=pylD)

[Back to BioLiP]