Structure of PDB 4pgk Chain A

Receptor sequence
>4pgkA (length=221) Species: 74547 (Prochlorococcus marinus str. MIT 9313) [Search protein sequence]
ALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPDHVEELKRLA
KMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTPTCL
LIQALLIEAFAISAYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKA
NLESCREELLEANRENLPLILRMLDQVAGDAAVLQMDKEDLIEDFLIAYQ
ESLTEIGFNTREITRMAAAAL
3D structure
PDB4pgk Insights into substrate and metal binding from the crystal structure of cyanobacterial aldehyde deformylating oxygenase with substrate bound.
ChainA
Resolution2.17 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 4.1.99.5: aldehyde oxygenase (deformylating).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FE A E45 E73 H76 E157 E25 E53 H56 E137
BS02 FE A E73 E128 E157 H160 E53 E108 E137 H140
BS03 Y69 A G44 E73 E128 F130 A131 A134 Y135 L194 F215 G24 E53 E108 F110 A111 A114 Y115 L174 F195
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0046872 metal ion binding
GO:0046914 transition metal ion binding
GO:0071771 aldehyde oxygenase (deformylating) activity

View graph for
Molecular Function
External links
PDB RCSB:4pgk, PDBe:4pgk, PDBj:4pgk
PDBsum4pgk
PubMed25222710
UniProtQ7V6D4|ALDEC_PROMM Aldehyde decarbonylase (Gene Name=PMT_1231)

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