Structure of PDB 4pgd Chain A

Receptor sequence
>4pgdA (length=274) Species: 10090 (Mus musculus) [Search protein sequence]
GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRAR
WMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISG
CEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQA
GEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVT
LRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP
LGKEQYYTCHVYHQGLPEPLTLRW
3D structure
PDB4pgd The first step of peptide selection in antigen presentation by MHC class I molecules.
ChainA
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A Y7 V9 R62 E63 K66 N70 F74 D77 L81 Y84 Y116 T143 K146 W147 E152 Y159 T163 W167 Y171 Y7 V9 R62 E63 K66 N70 F74 D77 L81 Y84 Y116 T143 K146 W147 E152 Y159 T163 W167 Y171
External links
PDB RCSB:4pgd, PDBe:4pgd, PDBj:4pgd
PDBsum4pgd
PubMed25605945
UniProtP01901|HA1B_MOUSE H-2 class I histocompatibility antigen, K-B alpha chain (Gene Name=H2-K1)

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