Structure of PDB 4pdb Chain A

Receptor sequence
>4pdbA (length=129) Species: 260799 (Bacillus anthracis str. Sterne) [Search protein sequence]
TDPIADMLTRIRNANMVRHEKLEVPASKIKKEIAELLKREGFIRDVEYIE
DNKQGILRIFLKYGANNERVITGLKRISKPGLRVYAKADEVPRVLNGLGI
ALVSTSKGVMTDKDARQLQTGGEVVAYVW
3D structure
PDB4pdb Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis.
ChainA
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A P29 S53 K54 Q80 R109 Y111 K113 A114 S130 T131 S132 K133 G134 G147 E149 P3 S27 K28 Q54 R83 Y85 K87 A88 S104 T105 S106 K107 G108 G121 E123 PDBbind-CN: Kd=110nM
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:4pdb, PDBe:4pdb, PDBj:4pdb
PDBsum4pdb
PubMed25140011
UniProtQ81VR6|RS8_BACAN Small ribosomal subunit protein uS8 (Gene Name=rpsH)

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