Structure of PDB 4oxd Chain A

Receptor sequence
>4oxdA (length=185) Species: 171101 (Streptococcus pneumoniae R6) [Search protein sequence]
SHMEVVNKGDYYSIQGKYDEIIVANKHYPLSKDYNPGENPTAKAELVKLI
KAMQEAGFPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSE
HQTGLAFDVIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYM
AEEWHLRYVGKEAKEIAESGLSLEEYYGFEGGDYV
3D structure
PDB4oxd Structure of the LdcB LD-carboxypeptidase reveals the molecular basis of peptidoglycan recognition.
ChainA
Resolution2.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A R120 Q125 Y144 S145 A146 S151 H153 D160 Y191 Y201 E204 H207 R68 Q73 Y92 S93 A94 S99 H101 D108 Y139 Y149 E152 H155
BS02 ZN A H153 D160 H207 H101 D108 H155
BS03 ZN A H-2 E56 H2 E4
BS04 ZN A D62 D85 D10 D33
BS05 MG A S121 T124 S69 T72
BS06 ZN A D114 H115 D62 H63
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4oxd, PDBe:4oxd, PDBj:4oxd
PDBsum4oxd
PubMed24909784
UniProtQ8DQQ1

[Back to BioLiP]