Structure of PDB 4oi1 Chain A

Receptor sequence
>4oi1A (length=395) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]
ENVQEFVLKEDCELRFAAGDDSDVCLELVKGYAEIFGTELLLNKKYTFPA
KSRVAAFTWKGATIELVGTTESAYVAESTPMVIYLNIHAAMEEVRKKREE
QAKAKGPRLLLVGPTDVGKTTVSRILCNYSVRQGRTPIFVELDVGQNSVS
VPGTVAAVLVQKTADVIDGFERNQPIVFNFGHTSPSANLSLYEALFKEMA
TTLNAQIQENDEAKIGGMIINTCGWVDGEGYKCIVKAASAFEVDVVIVLD
HERLYSDLSKELPEFVRLTHVPKSGGVEQRTGQIRSKMRGENVHRYFYGT
RANNLYPFTFDVSFDDVTLCKIGKLVIMEPSADIKHHLFAFSRSTKADEN
VLKSPVFGFCLVTEVDLEKRTMSILCPQRTIPSKVLVFSDITHLD
3D structure
PDB4oi1 RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1.
ChainA
Resolution2.3 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A D151 G153 T191 S192 S194 C231 G232 W233 R293 R297 D143 G145 T183 S184 S186 C223 G224 W225 R285 R289
BS02 ADP A A58 D124 G126 K127 T128 T129 G284 V285 A55 D116 G118 K119 T120 T121 G276 V277
BS03 ALF A T123 K127 D151 Q154 G232 R288 R293 T115 K119 D143 Q146 G224 R280 R285
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0051731 polynucleotide 5'-hydroxyl-kinase activity
GO:0051736 ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity
Biological Process
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0031124 mRNA 3'-end processing
Cellular Component
GO:0005634 nucleus
GO:0005849 mRNA cleavage factor complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4oi1, PDBe:4oi1, PDBj:4oi1
PDBsum4oi1
PubMed24813946
UniProtP52874|CLP1_CAEEL Protein clpf-1 (Gene Name=clpf-1)

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