Structure of PDB 4ohz Chain A

Receptor sequence
>4ohzA (length=399) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]
ENVQEFVLKEDCELRFAAGDDSDVCLELVKGYAEIFGTELLLNKKYTFPA
KSRVAAFTWKGATIELVGTTESAYVAESTPMVIYLNIHAAMEEVRKKREE
QAAKAKGPRLLLVGPTDVGKTTVSRILCNYSVRQGRTPIFVELDVGQNSV
SVPGTVAAVLVQKTADVIDGFERNQPIVFNFGHTSPSANLSLYEALFKEM
ATTLNAQIQENDEAKIGGMIINTCGWVDGEGYKCIVKAASAFEVDVVIVL
DHERLYSDLSKELPEFVRLTHVPKSGGVEQRTGQIRSKMRGENVHRYFYG
TRANNLYPFTFDVSFDDVTLCKIGHETKLVIMEPSADIKHHLFAFSRSTK
ADENVLKSPVFGFCLVTEVDLEKRTMSILCPQRTIPSKVLVFSDITHLD
3D structure
PDB4ohz RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase clp1.
ChainA
Resolution2.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna A D151 Q154 T191 S192 S194 C231 G232 W233 R297 D144 Q147 T184 S185 S187 C224 G225 W226 R290
BS02 ADP A A58 D124 V125 G126 K127 T128 T129 G284 R288 A55 D117 V118 G119 K120 T121 T122 G277 R281
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0051731 polynucleotide 5'-hydroxyl-kinase activity
GO:0051736 ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity
Biological Process
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 RNA processing
GO:0006397 mRNA processing
GO:0031124 mRNA 3'-end processing
Cellular Component
GO:0005634 nucleus
GO:0005849 mRNA cleavage factor complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4ohz, PDBe:4ohz, PDBj:4ohz
PDBsum4ohz
PubMed24813946
UniProtP52874|CLP1_CAEEL Protein clpf-1 (Gene Name=clpf-1)

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