Structure of PDB 4k4j Chain A

Receptor sequence
>4k4jA (length=214) Species: 9606 (Homo sapiens) [Search protein sequence]
EDMPVERILEAELAVEPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPL
DDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGA
IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALRE
KVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGD
TPIDTFLMEMLEAP
3D structure
PDB4k4j Defining the Communication between Agonist and Coactivator Binding in the Retinoid X Receptor alpha Ligand Binding Domain.
ChainA
Resolution2.0 Å
3D
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A F277 V280 K284 L294 V298 R302 T449 F450 E453 F33 V36 K40 L50 V54 R58 T205 F206 E209
BS02 1O8 A I268 A271 A272 Q275 F313 R316 L326 A327 I345 C432 L436 I24 A27 A28 Q31 F69 R72 L82 A83 I101 C188 L192 PDBbind-CN: -logKd/Ki=6.12,Kd=0.752uM
BindingDB: EC50=820nM,Kd=33nM
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003707 nuclear steroid receptor activity
GO:0008270 zinc ion binding
Biological Process
GO:0006355 regulation of DNA-templated transcription
Cellular Component
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4k4j, PDBe:4k4j, PDBj:4k4j
PDBsum4k4j
PubMed24187139
UniProtP19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha (Gene Name=RXRA)

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