Structure of PDB 4jdz Chain A

Receptor sequence
>4jdzA (length=430) Species: 548473 (Staphylococcus aureus subsp. aureus TCH60) [Search protein sequence]
ANVNDLITSNTTLTVVDAIKNNKIVPAQDYLALKSQIKVDDKVKSGDYFT
IKYSDTVQVYGLNPEDIKNIGDIKDPNNGETIATAKHDTANNLITYTFTD
YVDRFNSVQMGINYSIYMDADTIPVSKNDVEFNVTIGNDTTKTTANIQYP
DYVSRDNNSIGSAFTETVSHAGNAEDPGYYKQTVYVNPSEKSLTNAKLKV
EAYHKDYPDNVGQINKDVTKIKIYQAPKDYVLNKGYDVNTNQLIDVTEQF
KDKITYGANDSVNVDFGSINNSYVVMVDTKFEYTTSASPTLVQMATLTSD
GNRSVSTGNALGFTNEVYKIGNYVWEDTNKNGVQDLGEVGVKGVTVVAYA
AAAAKEVGRTITDDKGGYLIPNLPNGDYRVEFSNLPQGYEVTPSKQGANE
ELDSNGVSSVITVNGKDNLSADLGIYKPAY
3D structure
PDB4jdz Structures of SdrD from Staphylococcus aureus reveal the molecular mechanism of how the cell surface receptors recognize their ligands
ChainA
Resolution2.1 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA A D252 N256 K258 D264 D17 N21 K23 D29
BS02 CA A N564 L662 D665 N322 L419 D422
BS03 CA A E643 D646 N648 S663 E400 D403 N405 S420
BS04 CA A D569 N571 N573 V575 D577 E580 D327 N329 N331 V333 D335 E338
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Mar 4 17:05:54 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '4jdz', asym_id = 'A', title = 'Structures of SdrD from Staphylococcus aureus re...e cell surface receptors recognize their ligands '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='4jdz', asym_id='A', title='Structures of SdrD from Staphylococcus aureus re...e cell surface receptors recognize their ligands ')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0005618,0007155', uniprot = '', pdbid = '4jdz', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005618,0007155', uniprot='', pdbid='4jdz', asym_id='A')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>