Structure of PDB 4hdc Chain A

Receptor sequence
>4hdcA (length=195) Species: 158879 (Staphylococcus aureus subsp. aureus N315) [Search protein sequence]
SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIV
LEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQ
GYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIDQEDLKFH
EKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
3D structure
PDB4hdc Discovery of Selective and Potent Inhibitors of Gram-Positive Bacterial Thymidylate Kinase (TMK).
ChainA
Resolution2.05 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.4.9: dTMP kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 13Y A E37 R48 L52 F66 S69 R70 R92 S97 Y100 Q101 E36 R47 L51 F65 S68 R69 R91 S96 Y99 Q100 MOAD: ic50=1.2nM
PDBbind-CN: -logKd/Ki=8.92,IC50=1.2nM
Gene Ontology
Molecular Function
GO:0004798 thymidylate kinase activity
GO:0005524 ATP binding
GO:0016301 kinase activity
Biological Process
GO:0006227 dUDP biosynthetic process
GO:0006233 dTDP biosynthetic process
GO:0006235 dTTP biosynthetic process
GO:0009165 nucleotide biosynthetic process
GO:0016310 phosphorylation
GO:0046940 nucleoside monophosphate phosphorylation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4hdc, PDBe:4hdc, PDBj:4hdc
PDBsum4hdc
PubMed23043329
UniProtP65249|KTHY_STAAN Thymidylate kinase (Gene Name=tmk)

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