Structure of PDB 4gyi Chain A

Receptor sequence
>4gyiA (length=339) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence]
KLDTRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIARLRGGSSGVH
KSIATLAKAGLIARMKEAKYDGYRLTYGGLDYLALHTHAARKDVYSVGSR
IGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKRDYLRNRSTGSWMY
LSRLAAIKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSSV
PDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTP
IIIDFPQMVSMDHPNAEMYFDRDVQCIKRFFERRFHFVSTTPGPFYKDAK
KTVGKDGAKRLDAALEASGFTKKMAKDLEAAIREQQESR
3D structure
PDB4gyi ATPase-dependent role of the atypical kinase Rio2 on the evolving pre-40S ribosomal subunit.
ChainA
Resolution2.2 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.11.1: non-specific serine/threonine protein kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP A S108 I110 K124 M189 V192 I256 X257 S107 I109 K123 M186 V189 I253 X254
BS02 MG A N234 X257 N231 X254
Gene Ontology
Molecular Function
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0005524 ATP binding
GO:0044024 histone H2AS1 kinase activity
GO:0046872 metal ion binding
Biological Process
GO:0006338 chromatin remodeling
GO:0006468 protein phosphorylation
GO:0016310 phosphorylation
GO:0030490 maturation of SSU-rRNA
Cellular Component
GO:0005634 nucleus
GO:0005829 cytosol
GO:0030688 preribosome, small subunit precursor

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4gyi, PDBe:4gyi, PDBj:4gyi
PDBsum4gyi
PubMed23104056
UniProtG0S5R3

[Back to BioLiP]