Structure of PDB 4gp4 Chain A

Receptor sequence

>4gp4A (length=554) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]

SRVYEAYPEKKATLYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRL
LPFVQSYYQGLTLHGVLNAIVFTQLFAQAIMVYLPARELNMRPNMGLMWL
SWWMAFIGLVVAALPLLANEATVLFTFYPPLKGHWAFYLGASVFVLSTWV
SIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFLASLGLVLEAVLFL
LPWSFGLVEGVDPLVARTLFWWTGHPIVYFWLLPAYAIIYTILPKQAGGK
LVSDPMARLAFLLFLLLSTPVGFHHQFADPGIDPTWKMIHSVLTLFVAVP
SLMTAFTVAASLEFAGRLRGGRGLFGWIRALPWDNPAFVAPVLGLLGFIP
GGAGGIVNASFTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNL
TGKPISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAQVPD
AYPHAAVPMVFNVLAGIVLLVALLLFIYGLFSVLLSRERKPELAEAPLPF
AEVISGPEDRRLVLAMDRIGFWFAVAAILVVLAYGPTLVQLFGHLNPVPG
WRLW

3D structure

PDB

4gp4 Ligand Access to the Active Site in Thermus thermophilusba(3) and Bovine Heart aa(3) Cytochrome Oxidases.

Chain

Resolution

2.8 Å

3D
structure

Catalytic site residues are labeled in the structure
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Enzymatic activity

Catalytic site (original residue number in PDB)	H72 P101 F133 S155 T156 H233 I235 Y237 Y248 H282 H283 S309 G331 H384 F385 H386 R449 R450
Catalytic site (residue number reindexed from 1)	H64 P93 F125 S147 T148 H225 I227 Y229 Y240 H274 H275 S301 G323 H376 F377 H378 R441 R442
Enzyme Commision number	7.1.1.9: cytochrome-c oxidase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CU	A	H233 H282 H283	H225 H274 H275
BS02	HEM	A	G39 Q42 A43 Y46 Y65 L69 H72 N76 L132 F133 F385 H386 V389 A390 T394 W428 M432 M435 R449 R450 L477	G31 Q34 A35 Y38 Y57 L61 H64 N68 L124 F125 F377 H378 V381 A382 T386 W420 M424 M427 R441 R442 L469
BS03	HAS	A	F133 W229 V236 Y237 H282 H283 S309 L310 A313 A317 L353 F356 G360 G363 I364 N366 A367 D372 H376 H384 F385 Q388 V389 R449	F125 W221 V228 Y229 H274 H275 S301 L302 A305 A309 L345 F348 G352 G355 I356 N358 A359 D364 H368 H376 F377 Q380 V381 R441

Gene Ontology

	Molecular Function
GO:0004129	cytochrome-c oxidase activity
GO:0020037	heme binding
GO:0046872	metal ion binding

	Biological Process
GO:0006119	oxidative phosphorylation
GO:0009060	aerobic respiration
GO:1902600	proton transmembrane transport

	Cellular Component
GO:0005886	plasma membrane
GO:0016020	membrane

View graph for
Molecular Function

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Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:4gp4, PDBe:4gp4, PDBj:4gp4
PDBsum	4gp4
PubMed	23282175
UniProt	Q5SJ79\|COX1_THET8 Cytochrome c oxidase subunit 1 (Gene Name=cbaA)

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