Structure of PDB 4g0r Chain A

Receptor sequence
>4g0rA (length=554) Species: 10799 (H-1 parvovirus) [Search protein sequence]
GIGVSTGTYDNQTTYKFLGDGWVEITAHASRLLHLGMPPSENYCRVTVHN
NQTTGHGTKVKGNMAYDDTHQQIWTPWSLVDANAWGVWFQPSDWQFIQNS
MESLNLDSLSQELFNVVVKTVTEQQGAGAIKVYNNDLTACMMVALDSNNI
LPYTPAAQTSETLGFYPWKPTAPAPYRYYFFMPRQLSVTSSNSAEGTQIT
DTIGEPQALNSQFFTIENTLPITLLRTGDEFTTGTYIFNTDPLKLTHTWQ
TNRHLGMPPRITDLPTSDTATASLTANGDRFGSTQTQNVNYVTEALRTRP
AQIGFMQPHDNFEANRGGPFKVPVVPLDITAGEDHDANGAIRFNYGKQHG
EDWAKQGAAPERYTWDAIDSAAGRDTARCFVQSAPISIPPNQNQILQRED
AIAGRTNMHYTNVFNSYGPLSAFPHPDPIYPNGQIWDKELDLEHKPRLHV
TAPFVCKNNPPGQLFVRLGPNLTDQFDPNSTTVSRIVTYSTFYWKGILKF
KAKLRPNLTWNPVYQATTDSVANSYMNVKKWLPSATGNMHSDPLICRPVP
HMTY
3D structure
PDB4g0r Structural characterization of h-1 parvovirus: comparison of infectious virions to empty capsids.
ChainA
Resolution2.7 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna A L146 L184 S186 N187 T272 Y275 I276 N497 N498 G501 L109 L145 S147 N148 T233 Y236 I237 N458 N459 G462
BS02 DC A W59 K540 W22 K501
Gene Ontology
Molecular Function
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:4g0r, PDBe:4g0r, PDBj:4g0r
PDBsum4g0r
PubMed23449783
UniProtP03136|CAPSD_PAVHH Capsid protein VP1

[Back to BioLiP]