Structure of PDB 4db3 Chain A

Receptor sequence
>4db3A (length=311) Species: 672 (Vibrio vulnificus) [Search protein sequence]
NLYFQSNAMYYGFDVGGTKIEFGAFNEKLERVATERVPTPTDDYPLLLET
IAGLVAKYDQEFACEGKIGLGLPGMEDADDATVLTVNVPAAKGKPLRADL
EAKIGRSVKIENDANCFALSEAWDEELQDAPSVMGLILGTGFGGGLIYEG
KVFSGRNNVAGELGHMRLPLDAWFHLGDNAPLLGCGCGKKGCLDSYLSGR
GFELLYAHYYGEEKKAIDIIKANAAGDEKAAEHVERFMELLAICFGNIFT
ANDPHVVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGG
VRGAAFLNIKG
3D structure
PDB4db3 1.95 Angstrom Resolution Crystal Structure of N-acetyl-D-glucosamine kinase from Vibrio vulnificus.
ChainA
Resolution1.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.1.59: N-acetylglucosamine kinase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN A H157 C177 C179 C184 H165 C185 C187 C192
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0008270 zinc ion binding
GO:0016301 kinase activity
GO:0045127 N-acetylglucosamine kinase activity
GO:0046872 metal ion binding
Biological Process
GO:0006044 N-acetylglucosamine metabolic process
GO:0009254 peptidoglycan turnover
GO:0016310 phosphorylation
GO:0046835 carbohydrate phosphorylation

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:4db3, PDBe:4db3, PDBj:4db3
PDBsum4db3
PubMed
UniProtQ8D9M7|NAGK_VIBVU N-acetyl-D-glucosamine kinase (Gene Name=nagK)

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