Structure of PDB 4d4d Chain A

Receptor sequence
>4d4dA (length=333) Species: 1397 (Niallia circulans) [Search protein sequence]
SDGDTAMKAFNDTFWDPNAKMFWKDSKREKHQDFWVEAELWELVMDAYQH
TSDPALKAELKTQIDDVYDGTVAKYGQDWTNNPFNDDIMWWAMGSARAYQ
ITGNPRYLEAARDHFDFVYDTQWDEEFANGGIWWLNSDHNTKNACINFPA
AQAALYLYDITKDEHYLNAATKIFRWGKTMLTDGNGKVFDRIEIEHGAVP
DATHYNQGTYIGSAVGLYKATGNAVYLDDAVKAAKFTKNHLVDSNGVLNY
EGPNGDLKGGKTILMRNLAHLQKTLDETGQYPEFSAEFDEWLAFNIEMAW
SHQNSDHIVDGNWAGQGTYESWSSAAAVQALNG
3D structure
PDB4d4d Evidence for a Boat Conformation at the Transition State of Gh76 Alpha-1,6-Mannanases- Key Enzymes in Bacterial and Fungal Mannoprotein Metabolism
ChainA
Resolution1.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.101: mannan endo-1,6-alpha-mannosidase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 IFM A W73 D124 D125 Y243 D294 W35 D86 D87 Y205 D256 PDBbind-CN: -logKd/Ki=5.96,Kd=1.1uM
BS02 MAN A W172 C183 D228 Y243 L295 W134 C145 D190 Y205 L257 PDBbind-CN: -logKd/Ki=5.96,Kd=1.1uM
Gene Ontology
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Biological Process
External links
PDB RCSB:4d4d, PDBe:4d4d, PDBj:4d4d
PDBsum4d4d
PubMed25772148
UniProtQ9Z4P9

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