Structure of PDB 4d0y Chain A

Receptor sequence
>4d0yA (length=184) Species: 373153 (Streptococcus pneumoniae D39) [Search protein sequence]
AEVVNKGDYYSIQGKYDEIIVANKHYPLSKDYNPGENPTAKAELVKLIKA
MQEAGFPISDHYSGFRSYETQTKLYQDYVNQDGKEAADRYSARPGYSEHQ
TGLAFDVIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYMAE
EWHLRYVGKEAKEIAESGLSLEEYYGFEGGDYVD
3D structure
PDB4d0y Structure of the Pneumococcal L,D-Carboxypeptidase Dacb and Pathophysiological Effects of Disabled Cell Wall Hydrolases Daca and Dacb.
ChainA
Resolution2.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 3.4.17.13: muramoyltetrapeptide carboxypeptidase.
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 ZN A H153 D160 H207 H99 D106 H153
BS02 ZN A H181 D184 H127 D130
BS03 ZN A D62 D85 D8 D31
Gene Ontology
Molecular Function
GO:0008233 peptidase activity
Biological Process
GO:0006508 proteolysis

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:4d0y, PDBe:4d0y, PDBj:4d0y
PDBsum4d0y
PubMed25060741
UniProtA0A0H2ZP28

[Back to BioLiP]