Structure of PDB 4d00 Chain A

Receptor sequence
>4d00A (length=319) Species: 11309 (unidentified influenza virus) [Search protein sequence]
PDKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTGINRLCMKGRKHK
DLGNCHPIGMLIGTPACDLHLTGMWDTLIERENAIAYCYPGATVNVEALR
QKIMESGGINKISTGFTYGSSINSAGTTRACMRNGGNSFYAELKWLVSKS
KGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGS
STYRNNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSR
VSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCP
KYVNRRSLMLATGMRNVPE
3D structure
PDB4d00 Receptor Binding by H10 Influenza Viruses.
ChainA
Resolution2.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 GAL A R128 Q215 G218 R129 Q216 G219
BS02 SIA A Y88 T126 T127 R128 W144 H176 E183 Q219 Y89 T127 T128 R129 W145 H177 E184 Q220
Gene Ontology
Molecular Function
GO:0046789 host cell surface receptor binding
Biological Process
GO:0019064 fusion of virus membrane with host plasma membrane
Cellular Component
GO:0019031 viral envelope

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4d00, PDBe:4d00, PDBj:4d00
PDBsum4d00
PubMed24870229
UniProtQ0A448|HEMA_I49A1 Hemagglutinin (Gene Name=HA)

[Back to BioLiP]