Structure of PDB 3zwt Chain A

Receptor sequence
>3zwtA (length=353) Species: 9606 (Homo sapiens) [Search protein sequence]
HLMPTLQGLLDPESAHRLAVRFTSLGLLRFQDSDMLEVRVLGHKFRNPVG
IAAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAV
INRYGFNSHGLSVVEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAE
DYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDG
LRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGL
QGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDAL
EKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGAD
HRR
3D structure
PDB3zwt Factors Influencing the Specificity of Inhibitor Binding to the Human and Malaria Parasite Dihydroorotate Dehydrogenases.
ChainA
Resolution1.55 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) G119 N145 F149 S215 N217 T218 K255 N284
Catalytic site (residue number reindexed from 1) G76 N102 F106 S172 N174 T175 K212 N241
Enzyme Commision number 1.3.5.2: dihydroorotate dehydrogenase (quinone).
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FMN A A96 G97 K100 S120 N145 N181 N212 K255 N284 T285 S305 G306 V333 G334 G335 L355 Y356 T357 A53 G54 K57 S77 N102 N138 N169 K212 N241 T242 S262 G263 V290 G291 G292 L312 Y313 T314
BS02 KFZ A M43 Q47 H56 A59 F98 Y356 L359 T360 P364 M3 Q7 H16 A19 F55 Y313 L316 T317 P321 MOAD: ic50=0.013uM
Gene Ontology
Molecular Function
GO:0004151 dihydroorotase activity
GO:0004152 dihydroorotate dehydrogenase activity
GO:0005515 protein binding
GO:0016491 oxidoreductase activity
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
GO:0106430 dihydroorotate dehydrogenase (quinone) activity
Biological Process
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process
GO:0006221 pyrimidine nucleotide biosynthetic process
GO:0006225 UDP biosynthetic process
GO:0009220 pyrimidine ribonucleotide biosynthetic process
GO:0044205 'de novo' UMP biosynthetic process
Cellular Component
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005829 cytosol
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3zwt, PDBe:3zwt, PDBj:3zwt
PDBsum3zwt
PubMed22621375
UniProtQ02127|PYRD_HUMAN Dihydroorotate dehydrogenase (quinone), mitochondrial (Gene Name=DHODH)

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