Structure of PDB 3w5t Chain A

Receptor sequence
>3w5tA (length=242) Species: 10116 (Rattus norvegicus) [Search protein sequence]
KLSEEQQHIIAILLDAHHKTYDPTYADFRDFRPPVRMSPLSMLPHLADLV
SYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTMDDM
SWDCGSQDYKYDVTDVSKAGHTLELIEPLIKFQVGLKKLNLHEEEHVLLM
AICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQLYAKMI
QKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEI
3D structure
PDB3w5t Crystal structures of complexes of vitamin D receptor ligand-binding domain with lithocholic acid derivatives.
ChainA
Resolution2.29 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A I238 K242 Q255 I256 L259 K260 P412 L413 E416 I58 K62 Q75 I76 L79 K80 P232 L233 E236
BS02 LHP A Y143 A227 I267 S271 S274 W282 V296 H301 H393 V414 Y21 A47 I87 S91 S94 W102 V116 H121 H213 V234 PDBbind-CN: -logKd/Ki=4.52,IC50=30uM
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004879 nuclear receptor activity
Biological Process
GO:0006355 regulation of DNA-templated transcription

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Molecular Function
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Biological Process
External links
PDB RCSB:3w5t, PDBe:3w5t, PDBj:3w5t
PDBsum3w5t
PubMed23723390
UniProtP13053|VDR_RAT Vitamin D3 receptor (Gene Name=Vdr)

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