Structure of PDB 3w1s Chain A

Receptor sequence
>3w1sA (length=261) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
NDIKQLLWNGELNVLVSIDPSFLMKGSPREIAVLRIRVPRETYLVNYMPL
IWNKIKSFLSFDPLTDSEKYFWFEHNKTPIPWNYPVGVLFDCLADVLTFL
RIHLVMGDSLPPTIIPIAKTQAEKFWFHQWKQVCFILNGSSKAIMSLSVN
EARKFWGSVITRNFQDFIEISNKISSSRPRHIPLIIQTSRTSGTFRISQP
TISMTGVNPTLKDIEGDILDVKEDVMVICQGIEIPWHMLLYDLYSKLRSF
DGFLYITLVPI
3D structure
PDB3w1s Structure of the Atg12-Atg5 conjugate reveals a platform for stimulating Atg8-PE conjugation
ChainA
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A I4 L7 G11 L13 N14 V15 R36 R41 D111 L113 Q253 I255 E256 M261 K269 I3 L6 G10 L12 N13 V14 R35 R40 D95 L97 Q230 I232 E233 M238 K246
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0008047 enzyme activator activity
GO:0016787 hydrolase activity
GO:0019776 Atg8-family ligase activity
GO:0140355 cargo receptor ligand activity
Biological Process
GO:0000045 autophagosome assembly
GO:0000422 autophagy of mitochondrion
GO:0000423 mitophagy
GO:0006914 autophagy
GO:0006995 cellular response to nitrogen starvation
GO:0015031 protein transport
GO:0016236 macroautophagy
GO:0032258 cytoplasm to vacuole targeting by the Cvt pathway
GO:0034727 piecemeal microautophagy of the nucleus
GO:0044804 nucleophagy
GO:0051365 cellular response to potassium ion starvation
Cellular Component
GO:0000407 phagophore assembly site
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005776 autophagosome
GO:0005829 cytosol
GO:0016020 membrane
GO:0034045 phagophore assembly site membrane
GO:0034274 Atg12-Atg5-Atg16 complex
GO:0044233 mitochondria-associated endoplasmic reticulum membrane contact site
GO:0061908 phagophore
GO:0120095 vacuole-isolation membrane contact site
GO:1990234 transferase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3w1s, PDBe:3w1s, PDBj:3w1s
PDBsum3w1s
PubMed23238393
UniProtQ12380|ATG5_YEAST Autophagy protein 5 (Gene Name=ATG5)

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