Structure of PDB 3vmw Chain A

Receptor sequence
>3vmwA (length=324) Species: 122631 (Bacillus sp. N16-5) [Search protein sequence]
GPQGYASMNGGTTGGAGGRVEYASTGAQIQQLIDNRSRSNNPDEPLTIYV
NGTITQGNSPQSLIDVKNHRGKAHEIKNISIIGVGTNGEFDGIGIRLSNA
HNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYY
DGLVDMKRNAEYITVSWNKFENHWKTMLVGHTDNASLAPDKITYHHNYFN
NLNSRVPLIRYADVHMFNNYFKDINDTAINSRVGARVFVENNYFDNVGSG
QADPTTGFIKGPVGWFYGSPSTGYWNLRGNVFVNTPNSHLNSTTNFTPPY
SYQVQSATQAKSSVEQHSGVGVIN
3D structure
PDB3vmw Crystal structure and substrate-binding mode of a novel pectate lyase from alkaliphilic Bacillus sp. N16-5.
ChainA
Resolution1.9 Å
3D
structure
Catalytic site residues are labeled in the structure
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Enzymatic activity
Catalytic site (original residue number in PDB) E119 T121 D148 D153 D157 S206 R207 P209
Catalytic site (residue number reindexed from 1) E117 T119 D146 D151 D155 S204 R205 P207
Enzyme Commision number 4.2.2.2: pectate lyase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADA A D228 K262 Y269 D226 K260 Y267
BS02 ADA A S206 Y269 S204 Y267
BS03 ADA A R207 R234 R205 R232
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0030570 pectate lyase activity
Biological Process
GO:0000272 polysaccharide catabolic process
Cellular Component
GO:0005576 extracellular region

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Cellular Component
External links
PDB RCSB:3vmw, PDBe:3vmw, PDBj:3vmw
PDBsum3vmw
PubMed22414692
UniProtD0VP31

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