Structure of PDB 3vmm Chain A

Receptor sequence
>3vmmA (length=471) Species: 1423 (Bacillus subtilis) [Search protein sequence]
ERKTVLVIADLGGCPPHMFYKSAAEKYNLVSFIPRPFAITASHAALIEKY
SVAVIKDKDYFKSLADFEHPDSIYWAHEDHNKPEEEVVEQIVKVAEMFGA
DAITTNNELFIAPMAKACERLGLRGAGVQAAENARDKNKMRDAFNKAGVK
SIKNKRVTTLEDFRAALEEIGTPLILKPTYLASSIGVTLITDTETAEDEF
NRVNDYLKSINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGI
MADGEYFPIAIHDKTPQIGFTETSHITPSILDEEAKKKIVEAAKKANEGL
GLQNCATHTEIKLMKNREPGLIESAARFAGWNMIPNIKKVFGLDMAQLLL
DVLCFGKDADLPDGLLDQEPYYVADCHLYPQHFKQNGQIPETAEDLVIEA
IDIPDGLLKGDTEIVSFSAAAPGTSVDLTLFEAFNSIAAFELKGSNSQDV
AESIRQIQQHAKLTAKYVLPV
3D structure
PDB3vmm Structural and enzymatic characterization of BacD, an l-amino acid dipeptide ligase from Bacillus subtilis
ChainA
Resolution2.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 6.3.2.49: L-alanine--L-anticapsin ligase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG A E311 E324 E310 E323
BS02 MG A E109 A183 E324 E108 A182 E323
BS03 ADP A K138 I176 K178 A183 S185 F228 L229 Q268 F271 I323 E324 K137 I175 K177 A182 S184 F227 L228 Q267 F270 I322 E323
BS04 P0D A L12 G13 G14 S184 E273 H309 E311 E324 R328 G331 L11 G12 G13 S183 E272 H308 E310 E323 R327 G330
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0005524 ATP binding
GO:0016874 ligase activity
GO:0034026 L-amino-acid alpha-ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0017000 antibiotic biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:3vmm, PDBe:3vmm, PDBj:3vmm
PDBsum3vmm
PubMed22407814
UniProtP39641|BACD_BACSU Alanine--anticapsin ligase (Gene Name=bacD)

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