Structure of PDB 3vf1 Chain A

Receptor sequence
>3vf1A (length=680) Species: 134440 (Gersemia fruticosa) [Search protein sequence]
HMKYKITVETGDLRGAGTDASVSIKLTGKDGAETSAFSLDKYFHNDFESG
GTDTYDQSGVDVGEIAMITLKENGFGLKSDWYIAKVIIEKIDEATGFSNK
YIFPCYRWVIKQLVVYEGKAILPNSKDNVKTIAEQRTKEVSENKKLYKWG
TDPRYVQDLPGFVDAEEPKSLPKDVQFTDEATSSLFRVGLADFANLGLSH
LFGIWDDWDCLEDFRQLITPAIKSGLPHAAEYWRDDVWFGSQFLNGSNPE
VIRRCDKLPENFPVKNEMVEKLLDRGYTLEKAMKEGLIFITDYKILEGIP
TMDTPEDKRYITTPLGLFYLKNNDDIIPIAIQLYQQPGENNSIWTPLKDT
EWDWIMAKLWLRCADTQYHQMITHLLRCHLMMEPTAVSSWRNLPSVHPVW
KLLYPHTKGIMAINTLGRNDLIPTGGAADKVLSIGGGGQVTLMQKHYRSV
TFDSYDLVKDLRQRGVDGLRKFYYKDDALLLWNVIHQFVQDIIQIYYNDD
DSVKKDNEIQDWIRDLHENGYPAGSDGTDKKVPKSFENREELVHFLTVVV
FTCSCQHAAVNFSQMATYGFHPNSPTLMRQPPPTEKGKSNHKVIMASLAN
KHQAVTMVSVVNALTTIYPTEKFLGDYADNLFGDAAAHAAMAKFKSNLAN
ITKQITERNQGMVSPYTWLIPGHVPNSIAI
3D structure
PDB3vf1 Structure of a Calcium-dependent 11R-Lipoxygenase Suggests a Mechanism for Ca2+ Regulation.
ChainA
Resolution2.473 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) H373 H378 H556 N560 I679
Catalytic site (residue number reindexed from 1) H374 H379 H557 N561 I680
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FRU A K474 D475 K475 D476
BS02 FE2 A H373 H378 H556 N560 I679 H374 H379 H557 N561 I680
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872 metal ion binding
GO:0051213 dioxygenase activity
Biological Process
GO:0006629 lipid metabolic process
GO:0034440 lipid oxidation
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3vf1, PDBe:3vf1, PDBj:3vf1
PDBsum3vf1
PubMed22573333
UniProtQ2N410

[Back to BioLiP]