Structure of PDB 3ubx Chain A

Receptor sequence
>3ubxA (length=275) Species: 10090 (Mus musculus) [Search protein sequence]
KNYTFRCLQMSSFANRSWSRTDSVVWLGDLQTHRWSNDSATISFTKPWSQ
GKLSNQQWEKLQHMFQVYRVSFTRDIQELVKMMSPKEDYPIEIQLSAGCE
MYPGNASESFLHVAFQGKYVVRFWGTSWQTVPGAPSWLDLPIKVLNADQG
TSATVQMLLNDTCPLFVRGLLEAGKSDLEKQEKPVAWLSSGHRQLVCHVS
GFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEEAGL
ACRVKHSSLGGQDIILYWHHHHHHH
3D structure
PDB3ubx Structural basis for the recognition of C20:2-alpha GalCer by the invariant natural killer T cell receptor-like antibody L363.
ChainA
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 09N A C12 S28 F70 Y73 S76 D80 L84 W133 W142 L150 D153 G155 T156 C7 S23 F65 Y68 S71 D75 L79 W128 W137 L145 D148 G150 T151 PDBbind-CN: -logKd/Ki=7.60,Kd=25.2nM
External links
PDB RCSB:3ubx, PDBe:3ubx, PDBj:3ubx
PDBsum3ubx
PubMed22110136
UniProtP11609|CD1D1_MOUSE Antigen-presenting glycoprotein CD1d1 (Gene Name=Cd1d1)

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