Structure of PDB 3rya Chain A

Receptor sequence
>3ryaA (length=559) Species: 416870 (Lactococcus cremoris subsp. cremoris MG1363) [Search protein sequence]
GNFDVAYQNPDKAIKGGNLKVAYQSDSPMKAQWLSGLSNDATFATMSGPG
GGQDGLFFTDSGFKFIKGGAADVALDKESKTATITLRKDLKWSDGSEVTA
KDYEFTYETIANPAYGSDRWTDSLANIVGLSDYHTGKAKTISGITFPDGE
NGKVIKVQFKEMKPGMTQSGNGYFLETVAPYQYLKDVAPKDLASSPKTTT
KPLVTGPFKPENVVAGESIKYVPNPYYWGEKPKLNSITYEVVSTAKSVAA
LSSSKYDIINGMVSSQYKQVKNLKGYKVLGQQAMYISLMYYNLGHYDAKN
SINVQDRKTPLQDQNVRQAIGYARNVAEVDNKFSNGLSTPANSLIPPIFK
QFTSSSVKGYEKQDLDKANKLLDEDGWKLNKSTGYREKDGKELSLVYAAR
VGDANAETIAQNYIQQWKKIGVKVSLYNGKLMEFNSWVDHMTTPPGANDW
DITDGSWSLASEPSQQDLFSAAAPYNFGHFNDSEITKDLNDIDSAKSENP
TYRKAAFVKYQEDMNKKAYVIPTNFMLNYTPVNKRVVGMTLDYGAMNTWS
EIGVSSAKL
3D structure
PDB3rya Importance of a Hydrophobic Pocket for Peptide Binding in Lactococcal OppA.
ChainA
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide A N55 D56 A57 R135 G277 V279 M300 Y301 S303 R416 F450 S472 W473 S474 A476 S477 N39 D40 A41 R119 G261 V263 M284 Y285 S287 R400 F434 S456 W457 S458 A460 S461
Gene Ontology
Molecular Function
GO:1904680 peptide transmembrane transporter activity
Biological Process
GO:0015833 peptide transport
Cellular Component
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3rya, PDBe:3rya, PDBj:3rya
PDBsum3rya
PubMed21665971
UniProtA2RJ53

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