Structure of PDB 3r25 Chain A

Receptor sequence
>3r25A (length=390) Species: 391574 (Vibrionales bacterium SWAT-3) [Search protein sequence]
LKETIISDIHCIITKPDRHNLITVVVETNEGVTGFGCATFQQRPLAVKTM
VDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISGVDMALWDI
KAKLAGMPLHQLFGGKSRDAIPVYTHATSDTMEGIYDLVEGFLEKGYKHI
RCQLLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVHER
LFPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELF
NNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCP
PDMTPIGAAVNTHLNVHLHNAAIQEHVEYNGNTHKVFPNAAEPINGYLYA
SEIAGIGVEIDREAAAEFPVMYRPHEWTQSRLPDGAIHTP
3D structure
PDB3r25 Crystal structure of enolase superfamily member from VIBRIONALES BACTERIUM complexed with Mg and Glycerol in the active site
ChainA
Resolution1.603 Å
3D
structure
Catalytic site residues are labeled in the structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Catalytic site (original residue number in PDB) F42 R45 Y126 R153 Q155 D207 H209 E233 G258 E259 L260 R280 H282 H309 P311 E336 N341 P401
Catalytic site (residue number reindexed from 1) F40 R43 Y124 R151 Q153 D196 H198 E222 G247 E248 L249 R269 H271 H298 P300 E325 N330 P390
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG A D207 E233 E259 D196 E222 E248
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0046872 metal ion binding
Biological Process
GO:0009063 amino acid catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3r25, PDBe:3r25, PDBj:3r25
PDBsum3r25
PubMed
UniProtA5KUH4|IMAND_VIBBS D-galactonate dehydratase family member VSWAT3_13707 (Gene Name=VSWAT3_13707)

[Back to BioLiP]